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@openworm

OpenWorm

An open-source project dedicated to creating a virtual C. elegans nematode in a computer.
README.md

OpenWorm

An open-source project dedicated to creating a virtual C. elegans nematode in a computer.

An overview of the core repositories in the project, along with the current status of automated testing, can be found here.

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  1. OpenWorm OpenWorm Public

    Repository for the main Dockerfile with the OpenWorm software stack and project-wide issues

    Python 3.1k 251

  2. openworm.github.io openworm.github.io Public

    OpenWorm main website

    HTML 30 34

  3. org.geppetto org.geppetto Public

    Geppetto is an open-source platform to build web-based applications to visualize and simulate neuroscience data and models.

    Python 216 50

  4. c302 c302 Public

    The c302 framework for generating multiscale network models of C. elegans

    Python 163 39

  5. ChannelWorm2 ChannelWorm2 Public

    Tools and curated datasets to build quantitative models of C. elegans ion channels

    Jupyter Notebook 12 5

Repositories

Showing 10 of 114 repositories
  • sibernetic Public

    This is a C++/OpenCL implementation of the PCISPH algorithm supplemented with a set of biomechanics related features applied to C. elegans locomotion

    openworm/sibernetic's past year of commit activity
    C 391 118 33 11 Updated Nov 13, 2026
  • Worm3DViewer Public

    Test repository for multiple views of the worm in 3D

    openworm/Worm3DViewer's past year of commit activity
    Python 1 0 0 0 Updated Nov 13, 2026
  • WCONViewer Public

    Python based viewer for WCON files in 2D

    openworm/WCONViewer's past year of commit activity
    Python 0 MIT 0 0 0 Updated Nov 13, 2026
  • CE_locomotion Public Forked from edizquierdo/CE_locomotion

    Neuromechanical model of locomotion in C. elegans, originally developed by Eduardo Izquerdo, Erick Olivares and Randall Beer

    openworm/CE_locomotion's past year of commit activity
    C++ 4 6 7 4 Updated Nov 12, 2026
  • NicolettiEtAl2024_MN_IN Public Forked from ModelDBRepository/2017403

    C.elegans motor and interneurons (Nicoletti at al. 2024)

    openworm/NicolettiEtAl2024_MN_IN's past year of commit activity
    Python 0 4 4 3 Updated Nov 12, 2026
  • JohnsonMailler_MuscleModel Public

    C. elegans muscle model from Johnson & Mailler 2015

    openworm/JohnsonMailler_MuscleModel's past year of commit activity
    HTML 2 1 3 0 Updated Nov 12, 2026
  • muscle_model Public

    Model of C elegans body wall muscle based on Boyle & Cohen 2008

    openworm/muscle_model's past year of commit activity
    Jupyter Notebook 47 22 14 1 Updated Nov 12, 2026
  • Blender2NeuroML Public

    Conversion script to bring neuron models created in Blender into NeuroML format

    openworm/Blender2NeuroML's past year of commit activity
    Python 17 MIT 5 2 0 Updated Nov 12, 2026
  • Worm2Dtest Public

    Simulator of 2D worm body models

    openworm/Worm2Dtest's past year of commit activity
    C++ 2 MIT 0 0 0 Updated Nov 10, 2026
  • sibernetic-runner Public

    Run Sibernetic simulations on a Cloud Run GPU over HTTP

    openworm/sibernetic-runner's past year of commit activity
    Python 0 MIT 0 0 0 Updated Nov 4, 2026
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